Wednesday 24th of April 2024
 

Development of A visualization tool for Plasmodium falciparum Metabolic Networks


, Angela Makolo, and Segun Fatumo

Plasmodium falciparum, the deadly malaria parasite, causes the most severe form of malaria, resulting in about 1.5-2.7 million deaths annually mostly in Africa. Metabolism is one of the most complex cellular processes. Connections between biochemical reactions via substrate and product metabolites create complex metabolic networks that may be analyzed using network theory which plays a major role discovery of new drug targets. This is especially important as the malaria parasite has become resistant to existing malaria drugs. Discoveries in biomedical research increases the possibility of treating the disease by effectively and specifically targeting essential enzymes of this parasite. In this work, we developed a simple but efficient tool for visualisation of metabolic pathways of Plasmodium falciparum. This web based software enables translation of text format descriptions of biological networks into standardized diagrams and readable to users. It allows users to view their biological network in a pathway or sub-pathway and how reactions of interest are linked. Our tool was implemented in Java and tested on Windows and Unix systems.

Keywords: Metabolic Pathway, visualization, bipartite graph, graphml.

Download Full-Text


ABOUT THE AUTHORS




Angela Makolo
Department of Computer Science, University of Ibadan.




Segun Fatumo
H3Africa Bioinformatics Network (H3ABioNet) Node, National Biotechnology Development Agency (NABDA), Federal Ministry of Science and Technology (FMST), Abuja, Nigeria


IJCSI Published Papers Indexed By:

 

 

 

 
+++
About IJCSI

IJCSI is a refereed open access international journal for scientific papers dealing in all areas of computer science research...

Learn more »
Join Us
FAQs

Read the most frequently asked questions about IJCSI.

Frequently Asked Questions (FAQs) »
Get in touch

Phone: +230 911 5482
Email: info@ijcsi.org

More contact details »